Infer function from network neighbors :: Query Form

Choose GO annotation evidence code filters

Default 6 evidence codes are with high reliability.
For more information, read the table below.

Place your query gene(s) below (Max=1000).

Example query genes (6 genes associated to Synthetic multi-vulva suppression)

zfp-1, gfl-1, mes-4, pqn-28, ZK1127.3, M03C11.3


Gene Ontology Annotation Evidence code

GO evidence code Description by Gene Ontoloty
IDA Inferred from Direct Assay
IMP Inferred from Mutant Phenotype
IGI Inferred from Genetic Interaction
IPI Inferred from Physical Interaction
IEP Inferred from Expression Pattern
TAS Traceable Author Statement
RCA Inferred from Reviewed Computational Analysis
IGC Inferred from Genomic Context
ISS Inferred from Sequence or Structural Similarity
NAS Non-traceable Author Statement
IEA Inferred from Electronic Annotation
IC Inferred by Curator

For more detailed documentation, Go to Guide to GO Evidence Codes


Evidence codes for 21 types of data sets incorporated in WormNet

Evidence code Data set description
CE-CC Co-citation of worm gene
CE-CX Co-expression among worm genes
CE-GN Gene neighbourhoods of bacterial and archaeal orthologs of worm genes
CE-GT Worm genetic interactions
CE-LC Literature curated worm protein physical interactions
CE-PG Co-inheritance of bacterial and archaeal orthologs of worm genes
CE-YH High-throughput yeast 2-hybrid assays among worm genes
DM-PI Fly protein physical interactions
HS-CC Co-citation of human genes
HS-CX Co-expression among human genes
HS-DC Co-occurrence of domains among human proteins
HS-LC Literature curated human protein physical interactions
HS-MS human protein complexes from affinity purification/mass spectrometry
HS-YH High-throughput yeast 2-hybrid assays among human genes
SC-CC Co-citation of yeast genes
SC-CX Co-expression among yeast genes
SC-DC Co-occurrence of domains among yeast proteins
SC-GT Yeast genetic interactions
SC-LC Literature curated yeast protein physical interactions
SC-MS Yeast protein complexes from affinity purification/mass spectrometry
SC-TS Yeast protein interactions inferred from tertiary structures of complexes