Find new members of a pathway :: Query Form

Place your query gene(s) below (Max=250).

Example query genes (10 genes for rice resistance gene-dependent defense response signaling pathway)

LOC_Os01g28690, LOC_Os01g34890, LOC_Os01g55040, LOC_Os02g58560, LOC_Os03g03610
LOC_Os03g07580, LOC_Os04g34050, LOC_Os08g01260, LOC_Os12g06870, LOC_Os12g06890

Evidence codes for 24 types of data sets incorporated in RiceNet

Evidence code Data set description
AT-CX Association between Rice orthologs inferred from mRNA co-expression in Arabidopsis
AT-DC Association between Rice orthologs inferred from domain co-occurrence between Arabidopsis proteins
AT-LC Association between Rice orthologs inferred from literature-curated Arabidopsis protein interactions
CE-CC Association between Rice orthologs inferred from co-citation of C. elegans genes in Medline abstracts
CE-CX Association between Rice orthologs inferred from mRNA co-expression in C. elegans
CE-GT Association between Rice orthologs inferred from genetic interactions in C. elegans
CE-LC Association between Rice orthologs inferred from literature-curated C. elegans protein interactions
CE-YH Association between Rice orthologs inferred from C. elegans protein interactions by high-throughput yeast 2-hybrid analysis
HS-CX Association between Rice orthologs inferred from mRNA co-expression in Human
HS-DC Association between Rice orthologs inferred from domain co-occurrence between Human proteins
HS-LC Association between Rice orthologs inferred from literature-curated Human protein interactions
HS-MS Association between Rice orthologs inferred from human protein interactions by affinity purification/mass spectrometry analysis
HS-YH Association between Rice orthologs inferred from human protein interactions by high-throughput yeast 2-hybrid analysis
OS-CX mRNA co-expression between Rice genes
OS-GN Gene neighborhoods between Rice orthologs in bacterial genomes
OS-PG Phylogenetic profile similarity between Rice homologs
SC-CC Association between Rice orthologs inferred from co-citation of S. cerevisiae genes
SC-CX Association between Rice orthologs inferred from mRNA co-expression in S. cerevisiae
SC-DC Association between Rice orthologs inferred from domain co-occurrence between S. cerevisiae proteins
SC-GT Association between Rice orthologs inferred from genetic interactions in S. cerevisiae
SC-LC Association between Rice orthologs inferred from literature-curated S. cerevisiae protein interactions
SC-MS Association between Rice orthologs inferred from S. cerevisiae protein interactions by affinity purification/mass spectrometry analysis
SC-TS Association between Rice orthologs inferred from S. cerevisiae protein interactions which were also inferred from protein tertiary structures
SC-YH Association between Rice orthologs inferred from S. cerevisiae protein interactions by high-throughput yeast 2-hybrid analysis